MetaPocket 2.0

Welcome to metaPocket 2.0 !

Program Arguments

You can enter a PDB ID and its chain ID:

PDB ID:

(a four-letter PDB ID, e.g. 1dwd)

Chain ID:

(separate many IDs by commas, e.g. E,I)

Or select a pdb file of your own to upload:

Select file to upload:

How many pockets do you want:

Number of pockets:

Please enter your email address here, if you want us to send the result link to you:

E-mail address(optional):

Note:

- Before using metaPocket, please read our help page.
- The algorithm of metaPocket is illustrated here.
- It will take up 400 seconds to find pockets depending on the size of your protein and the parameters you set. Please be patient.

If this server is useful for your work, please cite:

Zengming Zhang, Yu Li, Biaoyang Lin, Michael Schroeder and Bingding Huang (2011), Identification of cavities on protein surface using multiple computational approaches for drug binding site prediction. Bioinformatics, 27 (15): 2083-2088. link

Bingding Huang (2009), metaPocket: a meta approach to improve protein ligand binding site prediction , Omics, 13(4), 325-330 Link, PDF.

Contact us

Bingding Huang, Email: bhuang@biotec.tu-dresden.de
Zengming Zhang, Email: zmzhang@mail.systemsbiozju.org

Report Bugs

If you find some bugs of this server, please help us improve metaPocket by reporting bugs to Zengming Zhang, any help from you will be greatly appreciated!

Acknowledgement

Funding from Klaus Tschira Foundation, MOST China (grant no: 2008DFA11320) and EU 7th Framework Marie Curie Actions IRSES project (grant no: 247097) is kindly acknowledged!