MSPocket

Introduction

MSPocket is an orientation independent program for the detection and graphical analysis of protein surface pockets [Zhu2011]. The approach is based on the solvent excluded surfaces generated by MSMS [Sanner1996].

Download

Version 1.1

What is new

Prerequisites

MSMS program is needed for calculating protein surfaces. Python and Numpy are required to run MSPocket script.

MSPocket program

Souce code of MSPocket Version 1.1.
MSPocket plugin for PyMOL provides a graphical user interface for runing MSPocket and render its results in PyMOL. It is included in the download.

Version 1.0

Prerequisites

MSMS program is needed for calculating protein surfaces.
In addition, the following modules are required to run MSPocket:

MSPocket program

MSPocket is implemented using Python and the souce code of MSPocket Version 1.0 is available for download.
MSPocket plugin for PyMOL provides a graphical user interface. It is included in the download.

License

MSPocket is free of charge under the terms of GNU General Public License for non-commercial use (i.e. by non-profit organizations on non-profit projects).

References


Last update: 24th Mar, 2011
If you have any problem or suggestion, please contact Zhu, Hongbo.